Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_020133: Mycobacterium liflandii 128FXT, complete genome

NCBI: NC_020133

Host Lineage: Mycobacterium liflandii; Mycobacterium; Mycobacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: First isolated from a colony of African clawed frogs. This organism causes a fatal systemic disease in frogs often characterized by skin lesions. Mycobacterium liflandii produces a polyketide toxin mycolactone E and two highly antigenic proteins ESAT-6 and CFP-10 which account, in part, for its pathogenicity.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1773419927021930Island text1.6762217.086831.7957Neighbours11BLASTN+77341.gbk
214279016797725188Island text1.4375817.418532.1172Neighbours11BLASTN+142790.gbk
390200092552523526Island text1.5538915.713214.2709Neighbours11BLASTN902000.gbk
4942375*96559923225Island text1.5768619.436430.8314Neighbours11BLASTN+942375.gbk
51443934146609922166Island text1.4914120.361120.2278Neighbours11BLASTN1443934.gbk
62144752*217059925848Island text1.5955121.511425.6392Neighbours11BLASTN+2144752.gbk
72421965244809926135Island text1.685720.673618.9859Neighbours11BLASTN+2421965.gbk
82886541*291380027260Island text1.8765717.839834.7348Neighbours11BLASTN+2886541.gbk
93787844*381646528622Island text1.7888420.591233.6883Neighbours11BLASTN+3787844.gbk
104841932485992417993Island text2.6775623.994229.3718Neighbours11BLASTN+4841932.gbk
114889034491001420981Island text1.5588515.585524.193Neighbours11BLASTN+4889034.gbk
124911044493609925056Island text1.7103416.598811.6129Neighbours11BLASTN+4911044.gbk
135020500504274122242Island text1.6158922.885129.3437Neighbours11BLASTN+5020500.gbk
145485528*550857423047Island text1.5304718.853420.6368Neighbours11BLASTN+5485528.gbk
155710661573224421584Island text1.4814420.075421.5191Neighbours11BLASTN5710661.gbk
165965500598723221733Island text1.540218.416426.8341Neighbours11BLASTN+5965500.gbk