Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_020126: Myxococcus stipitatus DSM 14675, complete genome

NCBI: NC_020126

Host Lineage: Myxococcus stipitatus; Myxococcus; Myxococcaceae; Myxococcales; Proteobacteria; Bacteria

General Information: Myxococcus stipitatus forms morphologically highly distinct fruiting bodies and produces secondary metabolites with antibiotic or cytotoxic activities.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
111779914813830340Island text2.2987821.67629.1971Neighbours11BLASTN117799.gbk
220421622291418699Island text1.5591416.898718.8513Neighbours11BLASTN+204216.gbk
3468384*48713218749Island text1.5424616.837920.712Neighbours11BLASTN468384.gbk
473525976895033692Island text2.1329518.532124.9767Neighbours11BLASTN735259.gbk
51274071*129376319693Island text1.5679519.418827.281Neighbours11BLASTN1274071.gbk
61830147184929119145Island text1.5451917.529517.16Neighbours11BLASTN+1830147.gbk
71873794*191614542352Island text2.2981220.272114.2776Neighbours11BLASTN+1873794.gbk
81943092*198756144470Island text1.4829916.075815.6362Neighbours11BLASTN1943092.gbk
92216926*224048823563Island text1.7306817.677217.3053Neighbours11BLASTN+2216926.gbk
102262049228774425696Island text1.6144418.160317.4943Neighbours11BLASTN2262049.gbk
112299150*232501225863Island text1.8931216.560427.1298Neighbours11BLASTN+2299150.gbk
122381380*240397522596Island text1.6291315.987521.3416Neighbours11BLASTN+2381380.gbk
132405175242534820174Island text1.5549517.714915.4541Neighbours11BLASTN+2405175.gbk
142687627270609918473Island text2.0457215.558124.4823Neighbours11BLASTN+2687627.gbk
152883194*290469121498Island text1.8102716.726519.6138Neighbours11BLASTN+2883194.gbk
162979959301192431966Island text2.2368719.59220.6375Neighbours11BLASTN2979959.gbk
173383902*342138737486Island text1.4495417.351727.2932Neighbours11BLASTN3383902.gbk
183426439345107224634Island text1.4575815.770911.8589Neighbours11BLASTN+3426439.gbk
193479500350409924600Island text1.6814317.010117.1913Neighbours11BLASTN+3479500.gbk
203979792400548025689Island text1.7249318.125123.6731Neighbours11BLASTN3979792.gbk
214039643406209922457Island text1.5181915.7818.7964Neighbours11BLASTN4039643.gbk
224084114*414423560122Island text2.1111218.872924.4348Neighbours11BLASTN+4084114.gbk
234430142*445344823307Island text1.5781217.999423.07Neighbours11BLASTN4430142.gbk
244517133*455758540453Island text1.5279221.225333.9114Neighbours8BLASTN4517133.gbk
254622371465424731877Island text3.9239726.155439.2103Neighbours11BLASTN+4622371.gbk
264974877*500016825292Island text1.4545519.576833.9201Neighbours11BLASTN4974877.gbk
275152359*517395921601Island text3.7673922.309433.0343Neighbours11BLASTN5152359.gbk
285470090*549422424135Island text1.7360715.517611.5696Neighbours11BLASTN+5470090.gbk
295558613560639247780Island text2.3525917.968223.096Neighbours11BLASTN5558613.gbk
305608880*564065231773Island text1.8005419.263116.6447Neighbours11BLASTN+5608880.gbk
315777895*579916621272Island text1.610216.010111.4752Neighbours11BLASTN5777895.gbk
325849483587209922617Island text1.9133616.683622.2454Neighbours8BLASTN+5849483.gbk
336019850604919929350Island text1.5598115.47317.7062Neighbours11BLASTN6019850.gbk
346190662621411323452Island text1.8381518.891817.4273Neighbours11BLASTN6190662.gbk
356264651628395819308Island text1.6716114.193218.4188Neighbours11BLASTN+6264651.gbk
366344827*637873333907Island text1.5804815.530815.2272Neighbours11BLASTN6344827.gbk
376738959*675803819080Island text2.0711520.235332.1317Neighbours11BLASTN+6738959.gbk
386791726685021658491Island text3.7530920.98131.0421Neighbours11BLASTN+6791726.gbk
396903465*693000326539Island text1.7824715.406112.3645Neighbours11BLASTN6903465.gbk
407015976*703659620621Island text2.3540519.120419.9517Neighbours11BLASTN+7015976.gbk
417255111*728027825168Island text2.2070422.275919.5493Neighbours11BLASTN7255111.gbk
427285452730937223921Island text1.9447915.439613.205Neighbours11BLASTN7285452.gbk
437372685739764324959Island text2.1114120.448226.3231Neighbours11BLASTN7372685.gbk
447451894747909927206Island text1.9689817.843627.4073Neighbours11BLASTN7451894.gbk
457661551*768494523395Island text1.9271217.308215.6302Neighbours11BLASTN+7661551.gbk
467686076770523519160Island text2.0337119.171314.8037Neighbours11BLASTN7686076.gbk
477896447792073324287Island text1.5520214.184117.8584Neighbours11BLASTN7896447.gbk
488080574810522824655Island text1.5762615.573315.8241Neighbours11BLASTN8080574.gbk
498287556831144523890Island text2.1536617.270824.5442Neighbours11BLASTN+8287556.gbk
508512908853149318586Island text1.5672417.6135.2438Neighbours11BLASTN+8512908.gbk
518885518*890611620599Island text1.6204817.138930.6842Neighbours11BLASTN8885518.gbk
528984500900339218893Island text1.9559415.299713.0345Neighbours11BLASTN+8984500.gbk
539726992974859821607Island text1.5252419.111720.6816Neighbours11BLASTN9726992.gbk
549795534981821822685Island text1.6319615.874314.9836Neighbours11BLASTN+9795534.gbk
559938287995659918313Island text1.5250916.123530.7Neighbours11BLASTN9938287.gbk
5610091703*1011263920937Island text1.5381216.372812.9431Neighbours11BLASTN+10091703.gbk
5710117469*1013695419486Island text1.5011818.114714.8008Neighbours11BLASTN+10117469.gbk
5810319500*1034942029921Island text1.5632816.796428.6356Neighbours11BLASTN+10319500.gbk