Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_020125: Riemerella anatipestifer RA-CH-2, complete genome

NCBI: NC_020125

Host Lineage: Riemerella anatipestifer; Riemerella; Flavobacteriaceae; Flavobacteriales; Bacteroidetes; Bacteria

General Information: This bacterium is the causative agent of a septicemic disease in ducks, geese, turkeys and other birds.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
11*1314913149Island text1.6826420.025636.2341BLASTN1.gbk
227213*4992022708Island text1.5462719.561432.853Neighbours21BLASTN+27213.gbk
317024518913718893Island text1.5339520.826241.5276Neighbours323BLASTN170245.gbk
4194691*22856533875Island text2.3244824.532644.8089Neighbours21BLASTN194691.gbk
5288706*31234423639Island text1.8727519.187737.7452Neighbours21BLASTN288706.gbk
61237536*126064623111Island text3.0263825.070142.2485Neighbours21BLASTN1237536.gbk
71545578156759122014Island text2.0039920.002434.5535Neighbours323BLASTN+1545578.gbk
81802000182440322404Island text1.4425520.829331.5386Neighbours21BLASTN1802000.gbk
91853208187638423177Island text1.881820.702835.9895Neighbours21BLASTN1853208.gbk
102080126211073730612Island text1.7983719.114826.6293Neighbours23BLASTN+2080126.gbk