Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_020064: Serratia marcescens FGI94, complete genome

NCBI: NC_020064

Host Lineage: Serratia marcescens; Serratia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This organism was discovered in 1819 by Bizio who named the organism after the Italian physicist Serrati. It was considered a nonpathogenic organism until late in the 20th century, although pathogenicity was noted as early as 1913. Serratia marcescens is an opportunistic human pathogen that is increasingly associated with life-threatening hospital-acquired infections. It is an environmental organism that has a broad host range, and is capable of infecting vertebrates and invertebrates, as well as plants. In humans, Serratia marcescens can cause meningitis (inflammation of the membrane surrounding the brain and spinal cord), endocarditis (inflammation of heart muscle) and pyelonephritis (inflammation of the kidneys). Many strains are resistant to multiple antibiotics. Environmental isolates are noted by production of the red pigment prodigiosin.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
179422*12524145820Island text1.8013335.683535.2778Neighbours41BLASTN+79422.gbk
2521500*55828736788Island text2.453837.883152.2112Neighbours41BLASTN+521500.gbk
3871338*89313221795Island text1.8766834.998247.6284Neighbours41BLASTN+871338.gbk
41150982*117040619425Island text3.9346346.410325.7533Neighbours51BLASTN+1150982.gbk
51409596*145680247207Island text1.6389630.86735.2735Neighbours51BLASTN+1409596.gbk
61501441151984318403Island text2.1935534.621256.9558Neighbours51BLASTN+1501441.gbk
71547524158410636583Island text1.5192832.312426.3507Neighbours51BLASTN+1547524.gbk
81611820*163518523366Island text3.8584247.253522.2795Neighbours51BLASTN+1611820.gbk
91854589*187841223824Island text1.5097135.098535.2966Neighbours51BLASTN1854589.gbk
101962172*199309930928Island text2.0198940.34632.8927Neighbours51BLASTN1962172.gbk
112299950232226522316Island text1.480430.806221.312Neighbours51BLASTN+2299950.gbk
122697116*272016423049Island text1.6158532.628133.6927Neighbours41BLASTN+2697116.gbk
132728569275276524197Island text2.7528443.679234.1316Neighbours41BLASTN+2728569.gbk
142779864280221322350Island text1.468933.049630.4422Neighbours51BLASTN+2779864.gbk
152921809295042328615Island text1.7883830.538741.3875BLASTN2921809.gbk
162960332298749027159Island text1.5162135.791627.4942Neighbours51BLASTN2960332.gbk
173157656*318828830633Island text1.5039334.697222.1769Neighbours41BLASTN3157656.gbk
183517500354133523836Island text2.3533438.600429.7718Neighbours41BLASTN+3517500.gbk
193609844*365321743374Island text2.6482339.75144.4489Neighbours41BLASTN+3609844.gbk
203790472381935828887Island text2.8575747.047529.7815Neighbours51BLASTN+3790472.gbk
213825916*385292327008Island text2.7622443.114934.9035Neighbours41BLASTN+3825916.gbk
223998715*409080492090Island text4.9043549.644828.6172Neighbours51BLASTN+3998715.gbk
234125500414419318694Island text1.5406231.493241.558Neighbours51BLASTN+4125500.gbk
244751097*477659925503Island text2.049541.504432.1717Neighbours51BLASTN4751097.gbk