Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_020063: Enterobacteriaceae bacterium strain FGI 57, complete genome

NCBI: NC_020063

Host Lineage: Enterobacteriaceae bacterium strain FGI 57; unclassified Enterobacteriaceae; unclassified Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Isolated from the fungus garden of the leaf-cutter ant Atta colombica, Panama.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
19743612048123046Island text1.8283936.412325.245Neighbours41BLASTN97436.gbk
2528296*55507326778Island text1.8971238.732533.7917Neighbours51BLASTN528296.gbk
31051310*108258031271Island text1.5177436.320552.4993Neighbours51BLASTN+1051310.gbk
41194000121676222763Island text2.541240.660126.4987Neighbours41BLASTN1194000.gbk
51659795169109931305Island text1.5933738.861931.6238Neighbours41BLASTN1659795.gbk
62011019*203659925581Island text4.1268647.263426.667Neighbours41BLASTN+2011019.gbk
72077233210134824116Island text1.9863237.794126.6346Neighbours51BLASTN+2077233.gbk
82230000227048640487Island text1.7472536.523732.6567Neighbours41BLASTN+2230000.gbk
92343813236609922287Island text1.4573630.818624.7673Neighbours51BLASTN+2343813.gbk
102449554*247289823345Island text1.4969929.72431.0574Neighbours41BLASTN+2449554.gbk
112480983250703626054Island text1.6316634.671134.6967Neighbours41BLASTN+2480983.gbk
122531643*255948527843Island text2.17737.471619.5095Neighbours41BLASTN+2531643.gbk
132565605*259927233668Island text2.074235.956124.7194Neighbours41BLASTN+2565605.gbk
142785652*280843522784Island text1.9191135.04323.9531Neighbours41BLASTN+2785652.gbk
153104000312597921980Island text1.4625129.730124.8447Neighbours51BLASTN3104000.gbk
163352516337629223777Island text1.6098334.133132.8215Neighbours41BLASTN+3352516.gbk
173690308*375363663329Island text1.4866430.082735.2114Neighbours41BLASTN+3690308.gbk
184127161*415360026440Island text2.42441.131826.0086Neighbours41BLASTN+4127161.gbk
194170464419392123458Island text1.5960737.468940.257Neighbours51BLASTN+4170464.gbk
204653422467509921678Island text2.1789940.099329.8473Neighbours41BLASTN+4653422.gbk