Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_020050: Cylindrospermum stagnale PCC 7417 plasmid pCYLST.01, partial

NCBI: NC_020050

Host Lineage: Cylindrospermum stagnale; Cylindrospermum; Nostocaceae; Nostocales; Cyanobacteria; Bacteria

General Information: Isolation: Soil, greenhouse, Stockholm, Sweden, 1972; Temp: Mesophile.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
112538625386Island text1.4786825.255441.5337Neighbours14BLASTN+1.gbk
2296702*32211125410Island text1.5952922.975445.8399Neighbours14BLASTN+296702.gbk
341342644399930574Island text1.6369332.002640.5056Neighbours14BLASTN413426.gbk