Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_019978: Halobacteroides halobius DSM 5150, complete genome

NCBI: NC_019978

Host Lineage: Halobacteroides halobius; Halobacteroides; Halobacteroidaceae; Halanaerobiales; Firmicutes; Bacteria

General Information: Country: Israel; Isolation: Dead Sea sediment; Temp: Mesophile. This is an endospore-forming anaerobic halophilic bacterium.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
17535*3211824584Island text4.1617526.229643.8399Neighbours21BLASTN+7535.gbk
239000*5838419385Island text1.6951422.721333.7313Neighbours21BLASTN39000.gbk
391483*11073919257Island text1.7265922.229138.9187Neighbours21BLASTN91483.gbk
4178277*21455436278Island text1.7063621.79938.5309Neighbours21BLASTN+178277.gbk
522461924698422366Island text2.4575522.937642.6775Neighbours21BLASTN+224619.gbk
631534633383318488Island text1.7544321.653533.8366Neighbours21BLASTN315346.gbk
7393351*41209918749Island text1.9072221.11240.6505Neighbours21BLASTN+393351.gbk
841663743588919253Island text1.6459122.305141.2332Neighbours21BLASTN+416637.gbk
962547664529019815Island text2.518722.014837.6233Neighbours21BLASTN+625476.gbk
1068636270713020769Island text1.8290722.110638.1817Neighbours21BLASTN+686362.gbk
11875941*90079624856Island text1.6018721.586236.9412Neighbours21BLASTN875941.gbk
1292297894681123834Island text3.8697324.979342.1922Neighbours21922978.gbk
131022209104497122763Island text1.5381224.045535.8204Neighbours21BLASTN+1022209.gbk
141066000*109095424955Island text1.9159922.519541.0789Neighbours21BLASTN1066000.gbk
151182056120531323258Island text1.4991723.486135.4002Neighbours21+1182056.gbk
161244000126570721708Island text1.7221223.900139.9665Neighbours21BLASTN+1244000.gbk
171410041*143133721297Island text1.8834421.843737.7949Neighbours21BLASTN1410041.gbk
181477724150009922376Island text1.8299621.879137.5107Neighbours21BLASTN+1477724.gbk
191816940*184397027031Island text2.1152920.859742.3925Neighbours21BLASTN1816940.gbk
202036779*205929022512Island text3.9904328.873144.2367Neighbours21BLASTN+2036779.gbk
212071435*209759326159Island text2.273922.921944.4235Neighbours21BLASTN+2071435.gbk
222189394220827218879Island text3.3030425.09442.1154Neighbours21BLASTN+2189394.gbk
232220863*223957218710Island text1.7952422.615240.3175Neighbours21BLASTN+2220863.gbk
242260395*228952329129Island text1.5739221.826442.1001Neighbours21BLASTN2260395.gbk
252293327*231609922773Island text2.3172523.309640.1564Neighbours21BLASTN+2293327.gbk
262364000238561421615Island text1.4308822.306737.7512Neighbours21BLASTN2364000.gbk
272396000241866122662Island text1.6174422.606632.794Neighbours212396000.gbk
282506472252616319692Island text1.4955122.391838.3542Neighbours21BLASTN+2506472.gbk
292532640255553422895Island text1.7671722.219138.1502Neighbours21BLASTN+2532640.gbk