Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_019977: Methanomethylovorans hollandica DSM 15978, complete genome

NCBI: NC_019977

Host Lineage: Methanomethylovorans hollandica; Methanomethylovorans; Methanosarcinaceae; Methanosarcinales; Euryarchaeota; Archaea

General Information: Environment: Fresh water, Sediment; Isolation: Anaerobic top layer (5 to 10 cm) of sediment; Temp: Mesophile; Temp: 37C; Country:Netherlands. Methanomethylovorans hollandica is a methylotrophic methanogen able to grow on dimethyl sulfide and methanethiol, isolated from freshwater sediment.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1652058523420030Island text1.7165626.366737.2899Neighbours328BLASTN65205.gbk
2253895*27533221438Island text1.6683132.344452.2293Neighbours328BLASTN253895.gbk
330245432124418791Island text1.7057926.899943.9953Neighbours328BLASTN+302454.gbk
4468568*49202923462Island text1.536725.83942.493Neighbours328BLASTN468568.gbk
572892274781518894Island text2.2371228.672914.427Neighbours318BLASTN728922.gbk
6828427*85333324907Island text1.4968230.297738.2909Neighbours318BLASTN828427.gbk
71189242122042031179Island text1.3929227.699437.0508+1189242.gbk
81245894*127791932026Island text1.7889536.741249.5768Neighbours21BLASTN+1245894.gbk
91353332137609922768Island text2.8865630.7613.2701Neighbours328BLASTN+1353332.gbk
101456366148409927734Island text1.4210230.903546.3211Neighbours21BLASTN+1456366.gbk
111621939*164769225754Island text3.7390930.872412.8386Neighbours328BLASTN1621939.gbk
121649546167287023325Island text1.5822926.730540.138Neighbours328BLASTN1649546.gbk
131806500182471218213Island text1.4753326.076132.5131Neighbours21BLASTN+1806500.gbk
141859953*187892018968Island text2.4677525.488417.1641Neighbours328BLASTN1859953.gbk
151897556*192929431739Island text1.4932226.109637.2579Neighbours328BLASTN1897556.gbk
161996414*202156625153Island text1.7653728.480445.5018Neighbours318BLASTN1996414.gbk
172141677216571124035Island text1.6661332.543746.5234Neighbours328BLASTN2141677.gbk
182307000*232459917600Island text1.8663728.726918.6087Neighbours328BLASTN2307000.gbk
192375703*239876823066Island text1.6050125.589741.5093Neighbours3282375703.gbk