Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_019976: Natronococcus occultus SP4 plasmid 2, complete sequence

NCBI: NC_019976

Host Lineage: Natronococcus occultus; Natronococcus; Halobacteriaceae; Halobacteriales; Euryarchaeota; Archaea

General Information: Environment: Fresh water, Aquatic; Isolation: Soda lake Lake Magadi; Temp: Mesophile; Temp: 37C; Country:Kenya: Lake Magadi. This is a member of the family Halobacteriaceae, aerobic, extremely halophilic archaeobacteria.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
111809918099Island text2.1896935.645736.7463Neighbours12BLASTN1.gbk
222705*5588133177Island text2.4243637.058127.396Neighbours12BLASTN+22705.gbk
363260*8173018471Island text1.5294929.57528.3713Neighbours11BLASTN63260.gbk