Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_019974: Natronococcus occultus SP4, complete genome

NCBI: NC_019974

Host Lineage: Natronococcus occultus; Natronococcus; Halobacteriaceae; Halobacteriales; Euryarchaeota; Archaea

General Information: Environment: Fresh water, Aquatic; Isolation: Soda lake Lake Magadi; Temp: Mesophile; Temp: 37C; Country:Kenya: Lake Magadi. This is a member of the family Halobacteriaceae, aerobic, extremely halophilic archaeobacteria.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1192862*21627623415Island text2.8134130.265119.4147Neighbours11BLASTN+192862.gbk
2298523*32591627394Island text4.642740.600423.8143Neighbours11BLASTN298523.gbk
3816641*84317126531Island text3.3030733.511723.5348Neighbours11BLASTN+816641.gbk
41020500*104682726328Island text2.3531730.53821.6108Neighbours11BLASTN+1020500.gbk
51115553*117909963547Island text3.1102235.888125.3902Neighbours12BLASTN+1115553.gbk
61184871*127279187921Island text3.7582639.47127.9654Neighbours12BLASTN+1184871.gbk
71280500*130082020321Island text2.1085727.68225.4142Neighbours11BLASTN+1280500.gbk
81689486*171258723102Island text1.6840524.127624.7046Neighbours11BLASTN+1689486.gbk
91909244*194059931356Island text3.8616937.131625.7356Neighbours11BLASTN1909244.gbk
102179000*223109952100Island text4.3245145.97133.1895Neighbours12BLASTN+2179000.gbk
112421422*244892727506Island text2.2228528.691724.7838Neighbours11BLASTN+2421422.gbk
122541880256173919860Island text1.7622124.134616.4393Neighbours11BLASTN+2541880.gbk
132889375292809238718Island text3.1455430.347230.8275Neighbours12BLASTN2889375.gbk
142960872298523224361Island text3.1129930.155237.6381Neighbours11BLASTN2960872.gbk
153013338304453131194Island text3.5176134.086130.2672Neighbours11BLASTN+3013338.gbk
163083899310618822290Island text1.6233224.914917.0788Neighbours11BLASTN+3083899.gbk
173465496349833232837Island text2.2568126.528618.7636Neighbours11BLASTN+3465496.gbk
183567164*359030123138Island text2.9534132.82329.9769Neighbours11BLASTN3567164.gbk
193760529*378164421116Island text2.0767325.705324.0204Neighbours11BLASTN3760529.gbk
203816000383853222533Island text1.765922.604615.8241Neighbours11BLASTN3816000.gbk