Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_019973: Mesorhizobium australicum WSM2073, complete genome

NCBI: NC_019973

Host Lineage: Mesorhizobium australicum; Mesorhizobium; Phyllobacteriaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Environment: Host, Plant root, Rhizosphere, Root; Temp: Mesophile; Isolation: Antoni's farm, Antonio Rd.; Country: Australia: Northam, Western Australia. Mesorhizobium australicum is an organism capable of nodulating the Australian forage legume Biserrula pelecinus.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
11731626*176479533170Island text2.9270730.729239.7841Neighbours11BLASTN+1731626.gbk
22417000*243959922600Island text1.8198127.768520.5052Neighbours11BLASTN+2417000.gbk
32744000276369719698Island text1.584525.709825.4385Neighbours11BLASTN+2744000.gbk
45069499509210422606Island text1.4902721.540632.3182Neighbours11BLASTN+5069499.gbk
55601346562502823683Island text1.5098421.72327.1349Neighbours11BLASTN+5601346.gbk
65650646569428443639Island text1.5567926.954618.7807Neighbours11BLASTN5650646.gbk
75694620571309918480Island text1.5142621.260922.0033Neighbours11BLASTN5694620.gbk
85716453*575629339841Island text1.6791126.268321.2588Neighbours11BLASTN+5716453.gbk
95797000582274125742Island text1.6709924.51423.703Neighbours11BLASTN+5797000.gbk
105838000*586259924600Island text1.7894121.105722.5602Neighbours11BLASTN+5838000.gbk
115869500589538625887Island text1.5435523.315423.6049Neighbours11BLASTN+5869500.gbk
125899142*593179432653Island text1.5819423.361518.3838Neighbours11BLASTN+5899142.gbk
135989816601096821153Island text1.5617421.142821.573Neighbours11BLASTN+5989816.gbk
146028795605165122857Island text1.4958426.52323.4621Neighbours11BLASTN6028795.gbk
156102442613434331902Island text1.8368624.063921.4077Neighbours11BLASTN+6102442.gbk