Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_019972: Methanomethylovorans hollandica DSM 15978 plasmid pMETHO01,

NCBI: NC_019972

Host Lineage: Methanomethylovorans hollandica; Methanomethylovorans; Methanosarcinaceae; Methanosarcinales; Euryarchaeota; Archaea

General Information: Environment: Fresh water, Sediment; Isolation: Anaerobic top layer (5 to 10 cm) of sediment; Temp: Mesophile; Temp. 37C; Country: Netherlands. Methanomethylovorans hollandica is a methylotrophic methanogen able to grow on dimethyl sulfide and methanethiol, isolated from freshwater sediment.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1110500*12938818889Island text1.741417.116127.6018Neighbours21BLASTN110500.gbk
214561717373728121Island text1.9050520.989622.249Neighbours21BLASTN+145617.gbk