Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_019970: Thermoanaerobacterium thermosaccharolyticum M0795, complete genome

NCBI: NC_019970

Host Lineage: Thermoanaerobacterium thermosaccharolyticum; Thermoanaerobacterium; Thermoanaerobacterales Family III; Thermoanaerobacterales; Firmicutes; Bacteria

General Information: Country: USA; Temp: Thermophile; Temp: 55-60C. Thermoanaerobacterium thermosaccharolyticum, formerly Clostridium thermosaccharolyticum, produces a number of thermostable starch-degrading enzymes.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
18938*2966920732Island text2.2476821.179335.7321Neighbours21BLASTN8938.gbk
2359857648740503Island text3.9689924.570948.3478Neighbours37BLASTN35985.gbk
3336472*41533078859Island text3.945822.535845.2918Neighbours21BLASTN+336472.gbk
4439969*46091520947Island text4.1495921.435742.228Neighbours21BLASTN+439969.gbk
5510632*53988629255Island text5.3320926.484549.8065Neighbours21BLASTN510632.gbk
6743497*76179818302Island text2.7386521.074539.6516Neighbours21BLASTN+743497.gbk
781391783706923153Island text2.1860319.221237.6538Neighbours21BLASTN+813917.gbk
892966695240622741Island text2.0996320.792834.6936Neighbours21BLASTN+929666.gbk
91343670*136621022541Island text2.8911518.819937.2518Neighbours21BLASTN1343670.gbk
101457794*148061622823Island text2.469427.919246.2265Neighbours21BLASTN1457794.gbk
111991944*200962917686Island text2.3497819.899139.9135Neighbours21BLASTN1991944.gbk
122080419209909918681Island text2.5465120.995537.3584Neighbours21BLASTN2080419.gbk
132190695*221115020456Island text1.7329420.613435.6073Neighbours21BLASTN+2190695.gbk
142263427*228281719391Island text1.7313521.007134.515Neighbours37BLASTN+2263427.gbk
152531500254995618457Island text1.6555120.625627.683Neighbours21BLASTN+2531500.gbk
162551607*257838226776Island text1.7537921.278935.0981Neighbours21BLASTN+2551607.gbk