Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_019964: Halovivax ruber XH-70, complete genome

NCBI: NC_019964

Host Lineage: Halovivax ruber; Halovivax; Halobacteriaceae; Halobacteriales; Euryarchaeota; Archaea

General Information: Environment: Salinewater; Isolation: Saline lake; China, Inner Mongolia, Lake; Temp: Mesophile; Temp: 37C. This halophile was first isolated from a saline lake in China. It requires at least 2.5 M NaCl for growth wit optimum growth occurring at 3.4 M NaCl.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1341196064326525Island text2.3257125.011132.4472Neighbours11BLASTN+34119.gbk
2188518*21430125784Island text2.2242928.402325.629Neighbours11BLASTN188518.gbk
3861000*88316922170Island text1.9370523.604122.8383Neighbours11BLASTN+861000.gbk
493096695259921634Island text2.5503532.236325.3015Neighbours11BLASTN930966.gbk
51031660106549333834Island text2.6793432.206427.4472Neighbours11BLASTN+1031660.gbk
61757472*178069823227Island text1.8487828.844226.6598Neighbours11BLASTN1757472.gbk
71873167190103827872Island text2.8801130.897129.7347Neighbours11BLASTN+1873167.gbk
81961237*198608224846Island text1.6290822.471931.8946Neighbours11BLASTN+1961237.gbk
92080444210148821045Island text1.8415321.048230.7457Neighbours11BLASTN+2080444.gbk
102424846*244909924254Island text1.9823923.684420.7657Neighbours11BLASTN2424846.gbk
112680935270505924125Island text1.7844623.895120.86Neighbours11BLASTN+2680935.gbk
122816990*287242655437Island text2.6664429.919626.3793Neighbours12BLASTN2816990.gbk
133028469*306464336175Island text2.1669627.310531.7965Neighbours11BLASTN3028469.gbk