Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_019962: Natrinema pellirubrum DSM 15624, complete genome

NCBI: NC_019962

Host Lineage: Natrinema pellirubrum; Natrinema; Halobacteriaceae; Halobacteriales; Euryarchaeota; Archaea

General Information: Country: Italy; Isolation: Red heat in salted hides (spoiled fish); Temp: Mesophile. Natrinema pellirubrum, formerly Halobacterium salinarium is a halophilic archaea requiring at least 1.7 M NaCl for growth and able to grow at salt concentrations of up to 4.3 M.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1217798*23623218435Island text1.8290221.72626.8364Neighbours11BLASTN217798.gbk
2304899*33009925201Island text2.030124.766530.2283Neighbours11BLASTN+304899.gbk
349200051353621537Island text2.2651627.991221.3698Neighbours11BLASTN+492000.gbk
496083199072529895Island text4.946341.583633.418Neighbours11BLASTN+960831.gbk
51142225116140819184Island text1.6131421.735219.6431Neighbours12BLASTN+1142225.gbk
61676632*171224135610Island text2.219125.55826.8847Neighbours11BLASTN+1676632.gbk
717504971870599120103Island text3.1780535.552224.0627Neighbours12BLASTN+1750497.gbk
81875952189389817947Island text1.70420.434113.8628Neighbours11BLASTN+1875952.gbk
91909103*196367554573Island text1.6717524.094316.5138Neighbours12BLASTN+1909103.gbk
102129393215518825796Island text3.1405132.449731.023Neighbours11BLASTN+2129393.gbk
112189432*221010320672Island text2.1400324.239229.7478Neighbours11BLASTN2189432.gbk
122654604*267918024577Island text2.8065829.525935.8769Neighbours11BLASTN2654604.gbk
132736815*276109924285Island text2.7907632.350431.8121Neighbours11BLASTN+2736815.gbk
143331849*335579323945Island text2.6065328.675731.7489Neighbours11BLASTN3331849.gbk
153577846*360280324958Island text2.9284532.483432.17Neighbours11BLASTN+3577846.gbk