Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_019960: Prevotella dentalis DSM 3688 chromosome 1, complete sequence

NCBI: NC_019960

Host Lineage: Prevotella dentalis; Prevotella; Prevotellaceae; Bacteroidales; Bacteroidetes; Bacteria

General Information: Environment: Host, Human oral microflora; Isolation: Human dental root canal; Temp: Mesophile; Temp: 37C. This organism is an member of the human oral microbial community that has been isolated in association with infections of the dental root canal.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1260997*28725926263Island text2.5049143.245949.9219BLASTN260997.gbk
2306254*33450128248Island text1.908543.825245.9742BLASTN306254.gbk
342524645029725052Island text1.6199237.998545.176BLASTN+425246.gbk
446941249470525294Island text1.5466938.180946.8145BLASTN469412.gbk
5659756*67867718922Island text1.9499737.746236.2833BLASTN+659756.gbk
6801589*82802426436Island text1.7605139.27428.6838BLASTN+801589.gbk
7907238*92659919362Island text1.9794837.647938.8598Neighbours310BLASTN907238.gbk
81126000115410928110Island text2.8419950.495930.2351BLASTN1126000.gbk
91198067*122826330197Island text4.4637452.922824.4927BLASTN1198067.gbk
101232851*126721334363Island text1.7449338.133646.1833BLASTN1232851.gbk
111272956*131712844173Island text1.9170339.356531.1848BLASTN1272956.gbk
121362370*138135718988Island text2.1684937.520346.5465BLASTN+1362370.gbk
131524338155076326426Island text3.9564550.835222.3853BLASTN+1524338.gbk
141658657*174985291196Island text2.7435450.603929.0005BLASTN+1658657.gbk