Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_019950: Mycobacterium canettii CIPT 140060008 complete genome

NCBI: NC_019950

Host Lineage: Mycobacterium canettii; Mycobacterium; Mycobacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Mycobacterium canettii, and related tubercle bacilli that cause human tuberculosis and exhibit unusual smooth colony morphology, are restricted to East-Africa.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
148188150600724127Island text1.8042317.997327.4015Neighbours11BLASTN+481881.gbk
21689910171687926970Island text2.2932823.684628.4335Neighbours11BLASTN+1689910.gbk
31870863189629425432Island text1.7758819.919616.7826Neighbours11BLASTN+1870863.gbk
42830682285444023759Island text1.7271919.562734.8857Neighbours11BLASTN2830682.gbk
53139865*316350123637Island text1.4926719.5124.5645Neighbours11BLASTN+3139865.gbk
63306419333122724809Island text1.5117323.638138.2081Neighbours11BLASTN+3306419.gbk
73818000384014722148Island text1.5455616.128531.6716Neighbours11BLASTN3818000.gbk