Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_019949: Mycoplasma cynos C142 complete genome

NCBI: NC_019949

Host Lineage: Mycoplasma cynos; Mycoplasma; Mycoplasmataceae; Mycoplasmatales; Tenericutes; Bacteria

General Information: Isolated from a dog with canine infectious respiratory disease (CIRD) in the USA.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
110341212608322672Island text3.1407718.157721.6639Neighbours21BLASTN103412.gbk
2525249*56698841740Island text1.8709812.77418.6922Neighbours21BLASTN+525249.gbk
356942659846929044Island text2.5284317.174825.1048Neighbours21BLASTN569426.gbk
4601691*62049118801Island text2.1360813.645524.715Neighbours21BLASTN601691.gbk
5631561*64987518315Island text1.6793912.593121.9363Neighbours21BLASTN631561.gbk
669568771849522809Island text1.6195513.025921.4399Neighbours21BLASTN695687.gbk
772282974626223434Island text1.5024313.740320.1121Neighbours21BLASTN+722829.gbk
8956791*98180325013Island text1.7149812.308519.1924Neighbours21BLASTN+956791.gbk