Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_019942: Aciduliprofundum sp. MAR08-339, complete genome

NCBI: NC_019942

Host Lineage: Aciduliprofundum; Aciduliprofundum; ; ; Euryarchaeota; Archaea

General Information: Environment: Deep sea, Hydrothermal vent, Marine; Temp: Thermophile; Temp: 70C. Aciduliprofundum boonei, is the first true acidophile to be isolated from deep-sea vents and is the sole described isolate of the deep-sea hydrothermal.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
168031*9400825978Island text1.906529.831143.0751BLASTN68031.gbk
2112182*13515022969Island text1.6522427.93540.4427BLASTN112182.gbk
3596000*61487218873Island text1.4798326.836124.8142Neighbours323BLASTN596000.gbk
468656471822131658Island text2.1421627.360614.8154Neighbours21BLASTN+686564.gbk
5987134*106047573342Island text1.6651631.159142.8237BLASTN+987134.gbk
61078837*111213233296Island text2.6295330.282426.815Neighbours323BLASTN+1078837.gbk
71211535124131529781Island text2.8902332.568519.3968Neighbours21BLASTN1211535.gbk
81270060*130759937540Island text1.6468927.441730.9351Neighbours323BLASTN+1270060.gbk
91370872*139409623225Island text1.8663127.204522.3733Neighbours3231370872.gbk