Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_019940: Thioflavicoccus mobilis 8321 chromosome, complete genome

NCBI: NC_019940

Host Lineage: Thioflavicoccus mobilis; Thioflavicoccus; Chromatiaceae; Chromatiales; Proteobacteria; Bacteria

General Information: Country: USA; Environment: Marsh, Mat; Isolation: flat, laminated microbial mat. This organism is a marine bacterium which is an obligate phototrophic organism. Under anoxic conditions this organism uses hydrogen sulfide and sulfur as electron donors and accumulates sulfur globules inside the cell.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
112993329933Island text1.5069521.755424.4508Neighbours11BLASTN+1.gbk
220371822463220915Island text2.0566324.035622.3283Neighbours11BLASTN+203718.gbk
3293476*31150418029Island text1.4817622.908626.7511Neighbours11BLASTN293476.gbk
438997941536425386Island text2.8333234.815824.6167Neighbours11BLASTN+389979.gbk
542400044952325524Island text2.3295326.344627.1277Neighbours11BLASTN424000.gbk
686696988859921631Island text1.7687924.665625.6348Neighbours11BLASTN+866969.gbk
792907195489925829Island text2.0137724.177719.5182Neighbours11BLASTN+929071.gbk
81059000109259933600Island text1.9042824.378737.3966Neighbours11BLASTN+1059000.gbk
91309359133197622618Island text1.8171621.364323.0844Neighbours11BLASTN1309359.gbk
101540434157684436411Island text1.6824122.149515.2394Neighbours11BLASTN+1540434.gbk
111670262*169388723626Island text2.1571925.680428.1599Neighbours11BLASTN+1670262.gbk
121727384175409926716Island text1.884324.13532.4743Neighbours11BLASTN+1727384.gbk
131837863186010522243Island text1.3879321.005618.1569Neighbours11BLASTN+1837863.gbk
141932906195224519340Island text1.6591822.618822.2155Neighbours11BLASTN+1932906.gbk
151963000*198871425715Island text1.5119321.528533.1344Neighbours11BLASTN+1963000.gbk
162098902211809319192Island text1.7698122.799119.6613Neighbours11BLASTN2098902.gbk
172236630*225811121482Island text1.5427320.558726.343Neighbours11BLASTN+2236630.gbk
182432689*245259919911Island text1.7282720.564819.5578Neighbours11BLASTN+2432689.gbk
192485000250482819829Island text1.7306321.990520.3192Neighbours11BLASTN+2485000.gbk
202546500257455428055Island text1.9893320.996532.4766Neighbours11BLASTN+2546500.gbk
212731105276061429510Island text2.9960934.348925.6551Neighbours11BLASTN2731105.gbk
222834850285310318254Island text1.5011822.550613.7656Neighbours11BLASTN+2834850.gbk
232893535*291820624672Island text1.9405421.400841.4484Neighbours11BLASTN+2893535.gbk
242931500*296263931140Island text2.452226.47923.965Neighbours11BLASTN+2931500.gbk
252997439302255325115Island text2.4309528.601134.0028Neighbours11BLASTN2997439.gbk
263089884311390024017Island text1.6559525.792525.434Neighbours11BLASTN+3089884.gbk
273267436329462227187Island text1.4131921.376525.9654Neighbours11BLASTN+3267436.gbk
283341794336057818785Island text1.9711824.483235.1457Neighbours11BLASTN+3341794.gbk
293480690350592525236Island text1.8371320.382424.997Neighbours11BLASTN+3480690.gbk
303518670*354270824039Island text1.434326.37421.5373Neighbours11BLASTN3518670.gbk
313660754368438423631Island text1.7622223.261227.4272Neighbours11BLASTN+3660754.gbk
323863124388578022657Island text2.5317526.449633.9187Neighbours11BLASTN+3863124.gbk
333915500393629220793Island text1.6118124.319124.9604Neighbours11BLASTN+3915500.gbk