Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_019908: Brachyspira pilosicoli P43/6/78 chromosome, complete genome

NCBI: NC_019908

Host Lineage: Brachyspira pilosicoli; Brachyspira; Brachyspiraceae; Spirochaetales; Spirochaetes; Bacteria

General Information: Brachyspira pilosicoli is an anaerobic spirochete that colonizes the large intestine of various species of birds and animals and humans. It attaches to colonic enterocytes in a condition called 'intestinal spirochetosis', characterized by mild colitis, diarrhea and reduced growth.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
121970*4627424305Island text1.4332715.710129.2884Neighbours21BLASTN21970.gbk
2121178*16296041783Island text1.6744114.457724.5249Neighbours21BLASTN+121178.gbk
3323375*34639223018Island text1.6083813.940922.2134Neighbours21BLASTN+323375.gbk
443600045549719498Island text1.5665214.796128.3195Neighbours21BLASTN436000.gbk
546328148754024260Island text2.640614.035120.0146Neighbours21BLASTN+463281.gbk
649992952450224574Island text1.5082716.530925.137Neighbours21BLASTN+499929.gbk
7641321*66828426964Island text3.1331417.376320.591Neighbours21BLASTN+641321.gbk
8700000*72314623147Island text1.4766315.351428.7307Neighbours21BLASTN+700000.gbk
9748635*78200833374Island text1.7318315.94822.9181Neighbours21BLASTN+748635.gbk
10807000*82525518256Island text2.2775513.940925.1919Neighbours21BLASTN+807000.gbk
11852230*87389021661Island text2.2412415.122428.621Neighbours21BLASTN+852230.gbk
12982471*100686924399Island text1.7895116.115929.1077Neighbours21BLASTN+982471.gbk
131043401106827224872Island text1.8435518.693328.2301Neighbours21BLASTN1043401.gbk
141225690124895123262Island text1.4800318.512935.6864Neighbours21BLASTN1225690.gbk
151296870*131523618367Island text1.6431713.393725.4538Neighbours21BLASTN1296870.gbk
161467000149134324344Island text1.9056616.762722.7655Neighbours21BLASTN+1467000.gbk
171512622*153609923478Island text2.3533414.120319.8441Neighbours21BLASTN+1512622.gbk
181565500*158883923340Island text2.207916.671226.9311Neighbours21BLASTN1565500.gbk
191886647190559918953Island text2.0519113.781319.6228Neighbours21BLASTN1886647.gbk
202068631*210767339043Island text2.6075218.050130.6838Neighbours21BLASTN2068631.gbk
212183215220322320009Island text2.1350414.305717.2737Neighbours21BLASTN+2183215.gbk
222247956226865220697Island text1.5013814.646222.8712Neighbours21BLASTN2247956.gbk
232285819*230841822600Island text1.546314.25127.2384Neighbours21BLASTN2285819.gbk
242312194*233353121338Island text1.6979914.803226.862Neighbours21BLASTN2312194.gbk
252401577244617744601Island text1.5333315.382118.1786Neighbours21BLASTN2401577.gbk
262496149*252410127953Island text1.6595818.5532.8698Neighbours21BLASTN+2496149.gbk