Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_019907: Liberibacter crescens BT-1 chromosome, complete genome

NCBI: NC_019907

Host Lineage: Liberibacter crescens; Liberibacter; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Isolated from the peduncle of the tropical Babaco plant (the hybrid mountain papaya) in 1995.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
146994*7016023167Island text2.2711621.856846.7475Neighbours21BLASTN46994.gbk
2287339*30606718729Island text2.2458423.160943.9883Neighbours314BLASTN287339.gbk
3318077*33850220426Island text2.2536929.356250.2223Neighbours21BLASTN318077.gbk
4467377*48686719491Island text2.3297624.286348.7676Neighbours314BLASTN467377.gbk
5539749*57520235454Island text2.10133.965132.5549Neighbours21+539749.gbk
6773944*79930425361Island text2.7121136.497731.0739Neighbours41BLASTN+773944.gbk
781916584077721613Island text1.5417624.177740.518Neighbours318BLASTN819165.gbk
884566387498629324Island text1.6140330.790721.3617Neighbours32+845663.gbk
9920797*94568724891Island text2.3189723.767646.1512Neighbours314BLASTN920797.gbk
101060005*108222122217Island text3.2396831.836750.5961Neighbours21BLASTN+1060005.gbk
111411124*143633025207Island text2.7374542.914224.9328Neighbours41BLASTN+1411124.gbk
121454554*147615521602Island text2.0950825.740739.4871Neighbours21BLASTN+1454554.gbk