Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_019904: Echinicola vietnamensis DSM 17526 chromosome, complete genome

NCBI: NC_019904

Host Lineage: Echinicola vietnamensis; Echinicola; Cyclobacteriaceae; Cytophagales; Bacteroidetes; Bacteria

General Information: Country: China; Environment: Marine; Isolation: Seawater collected in a mussel farm; Temp: Mesophile. Heterotrophic, Gram-negative, gliding, pigmented bacteria.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
156145*7767721533Island text1.656735.065147.8905Neighbours22BLASTN56145.gbk
2186056*20509919044Island text1.598432.462949.0498BLASTN+186056.gbk
3243465*26171818254Island text1.665726.510837.2701Neighbours21BLASTN243465.gbk
433465435735022697Island text2.0978828.016123.4496Neighbours32BLASTN334654.gbk
51616742164020023459Island text2.714928.939219.5218Neighbours21BLASTN+1616742.gbk
62010999203167720679Island text1.5917335.890131.8553Neighbours32BLASTN+2010999.gbk
72095971*212353927569Island text1.9900835.378646.985Neighbours319BLASTN+2095971.gbk
82292954231663023677Island text2.4759530.543328.085Neighbours222292954.gbk
92327842235384726006Island text2.2037428.503323.0189Neighbours328BLASTN+2327842.gbk
102597722*262009922378Island text1.4960428.745139.6577Neighbours21BLASTN2597722.gbk
113072241309206419824Island text2.0371327.064128.7124Neighbours21+3072241.gbk
123127945*314866320719Island text3.6131430.116114.9762Neighbours21BLASTN3127945.gbk
133216416323409917684Island text1.6230226.702334.8459BLASTN+3216416.gbk
143533344355364120298Island text2.5108327.897618.2315Neighbours21+3533344.gbk
153749160377365324494Island text2.0796127.165928.9469Neighbours21BLASTN+3749160.gbk
164744744476738722644Island text2.0432939.657647.1792Neighbours22BLASTN+4744744.gbk
175130458*515065120194Island text2.0730629.162225.1279Neighbours32BLASTN+5130458.gbk
185207309523213324825Island text1.6830537.673332.7552BLASTN+5207309.gbk
195241444528632244879Island text3.1262432.181434.2381Neighbours22BLASTN+5241444.gbk
205308998*532734418347Island text2.1640427.392420.5384Neighbours21BLASTN+5308998.gbk
215526000*554998123982Island text1.8808636.667544.1471BLASTN5526000.gbk