Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_019903: Desulfitobacterium dichloroeliminans LMG P-21439 chromosome,

NCBI: NC_019903

Host Lineage: Desulfitobacterium dichloroeliminans; Desulfitobacterium; Peptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: Country: Belgium; Environment: Soil; Isolation: Soil matrix of an anoxic water-saturated; Temp: Mesophile. This organism is able to dechlorinate compounds such as dichloroethane and dichloropropane making it a potential bioremediation agent.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
183857*10221418358Island text1.6955731.914752.348BLASTN83857.gbk
2134169*15436320195Island text1.8668733.891754.0261Neighbours22BLASTN134169.gbk
3175481*19860023120Island text1.8810132.266243.6046BLASTN175481.gbk
4223843*23949615654Island text1.8921232.576948.7194BLASTN+223843.gbk
5421000*43878617787Island text1.5119831.821539.944BLASTN421000.gbk
61058657107709918443Island text1.5194331.900542.289Neighbours22BLASTN+1058657.gbk
71312843*133773524893Island text1.7053642.992244.5965Neighbours23BLASTN+1312843.gbk
81345585138906843484Island text1.8424546.575240.2609Neighbours315BLASTN1345585.gbk
91745849*177969233844Island text1.6002741.999735.0204Neighbours315BLASTN1745849.gbk
102578966*260226523300Island text2.4014641.119853.9196Neighbours22BLASTN+2578966.gbk
112708500272624417745Island text1.7285732.326148.7026BLASTN+2708500.gbk
122806466*283131624851Island text1.5513435.274840.2345Neighbours22BLASTN2806466.gbk
133048132*306659918468Island text1.5440732.158943.032Neighbours22BLASTN3048132.gbk
143537545*356034222798Island text1.6463231.164938.8659BLASTN3537545.gbk