Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_019902: Thioalkalivibrio nitratireducens DSM 14787, complete genome

NCBI: NC_019902

Host Lineage: Thioalkalivibrio nitratireducens; Thioalkalivibrio; Ectothiorhodospiraceae; Chromatiales; Proteobacteria; Bacteria

General Information: Lithotrophic sulfur-oxidizing. Denitrification, Dissimilatory sulfate reduction. Moderately halophilic, obligately alkaliphilic and chemolithoautotrophic, Gram-negative bacterium isolated from a mixed culture capable of complete autotrophic denitrification with thiosulfate as electron donor at pH 10; the mixed culture was enriched from sediment from Lake Fazda (Wadi Natrun, Egypt), a hypersaline alkaline lake.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
111809918099Island text1.5059117.369916.9144Neighbours11BLASTN+1.gbk
2275744716019587Island text1.501416.551217.6473Neighbours11BLASTN+27574.gbk
39798712071322727Island text1.9772720.057125.5646Neighbours11BLASTN+97987.gbk
449850052359925100Island text1.6524617.885917.7146Neighbours11BLASTN+498500.gbk
5626934*64909922166Island text1.5507518.920228.7663Neighbours11BLASTN+626934.gbk
6831911*86394132031Island text2.6270921.61521.5734Neighbours11BLASTN+831911.gbk
71061432*109961938188Island text1.7128216.844418.6033Neighbours11BLASTN+1061432.gbk
81681320*170390722588Island text1.8120321.245721.086Neighbours11BLASTN+1681320.gbk
91863162188731124150Island text1.7165721.653832.0844Neighbours11BLASTN1863162.gbk
102306961233161224652Island text2.3358822.530128.1463Neighbours11BLASTN+2306961.gbk
112372097239285820762Island text1.7008915.348417.4199Neighbours11BLASTN+2372097.gbk
122943719296733623618Island text1.5363316.597819.7832Neighbours11BLASTN+2943719.gbk
133397170341960422435Island text1.5475918.310523.0475Neighbours11BLASTN3397170.gbk
143644000*366559921600Island text2.8303121.323530.1209Neighbours11BLASTN3644000.gbk