Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_019892: Singulisphaera acidiphila DSM 18658 chromosome, complete genome

NCBI: NC_019892

Host Lineage: Singulisphaera acidiphila; Singulisphaera; Planctomycetaceae; Planctomycetales; Planctomycetes; Bacteria

General Information: Country: Russia; Environment: Acidic wetlands; Isolation: Sphagnum peat sampled from the bog; Temp: Mesophile; Temp: 20-26C. Singulisphaera acidiphila is a member of the planctomyces which are commonly isolated from aquatic and terrestrial environments. This bacterium was originally isolated from a peat bog and is moderately acidophilic.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
137600040009924100Island text1.8296930.622524.5519Neighbours11BLASTN+376000.gbk
242997545970029726Island text1.5719322.871217.4062Neighbours11BLASTN+429975.gbk
380692983078623858Island text1.8170831.153237.1717Neighbours11BLASTN+806929.gbk
486550088480119302Island text1.5336726.073120.9404Neighbours11BLASTN+865500.gbk
51113114*113750824395Island text1.5936526.455138.2801Neighbours11BLASTN1113114.gbk
61675000169809923100Island text1.728332.719837.2498Neighbours11BLASTN1675000.gbk
72023500*204235718858Island text1.5365124.592738.8354Neighbours11BLASTN2023500.gbk
82058000*208052422525Island text1.4699226.611132.6105Neighbours11BLASTN2058000.gbk
92090689211009419406Island text1.4838825.814720.4714Neighbours11BLASTN+2090689.gbk
102684793270735422562Island text1.6244127.155628.1784Neighbours11BLASTN+2684793.gbk
112816549*285074034192Island text1.8490926.278925.516Neighbours11BLASTN2816549.gbk
123030737305029219556Island text1.5223431.594527.4658Neighbours11BLASTN+3030737.gbk
133086493*310858222090Island text1.5877724.555433.113Neighbours11BLASTN3086493.gbk
143366463338780421342Island text1.6833724.436939.6942Neighbours11BLASTN+3366463.gbk
155171629519822726599Island text2.0017530.98327.3917Neighbours11BLASTN+5171629.gbk
165246500526609919600Island text1.6806826.341237.772Neighbours11BLASTN5246500.gbk
175329910*535285522946Island text1.4765924.550134.0967Neighbours11BLASTN+5329910.gbk
185368096539222524130Island text1.7099725.889737.1741Neighbours11BLASTN+5368096.gbk
195542478556313320656Island text1.7500426.775322.9736Neighbours11BLASTN5542478.gbk
205613436563638722952Island text1.8120126.895227.2666Neighbours11BLASTN+5613436.gbk
216645515666761922105Island text1.5530122.034627.5368Neighbours11BLASTN6645515.gbk
226801246*682040619161Island text1.4846822.112129.6504Neighbours11BLASTN6801246.gbk
236825739685714531407Island text1.7578426.383337.6341Neighbours11BLASTN6825739.gbk
247223372*724998926618Island text1.7348924.672823.1824Neighbours11BLASTN7223372.gbk
257734519775949224974Island text1.5886423.370625.4477Neighbours11BLASTN+7734519.gbk
267822000*787572053721Island text1.9693725.633225.9112Neighbours11BLASTN+7822000.gbk
278124070814363319564Island text1.5602321.29534.0069Neighbours11BLASTN8124070.gbk
289207246*923144424199Island text1.5367828.998523.9818Neighbours11BLASTN9207246.gbk
299280367*930605525689Island text2.1848929.13131.8301Neighbours11BLASTN9280367.gbk