Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_019792: Natronobacterium gregoryi SP2 chromosome, complete genome

NCBI: NC_019792

Host Lineage: Natronobacterium gregoryi; Natronobacterium; Halobacteriaceae; Halobacteriales; Euryarchaeota; Archaea

General Information: Environment: Lake, Fresh water; Isolation: Lake Magadi, Kenya; Temp: Mesophile. A haloalkaliphilic archaeon.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1155273730521779Island text1.6186825.099921.124Neighbours11BLASTN+15527.gbk
215366117729923639Island text1.5132623.824630.0393Neighbours11BLASTN153661.gbk
31320545*134209921555Island text1.5746129.967232.0913Neighbours11BLASTN1320545.gbk
41839996186439924404Island text1.6183720.908330.5884Neighbours11BLASTN+1839996.gbk
52173865219409920235Island text1.5495927.002319.1193Neighbours11BLASTN2173865.gbk
62416000*243860122602Island text1.4882625.620119.6735Neighbours11BLASTN+2416000.gbk
72524130*258615962030Island text1.9173630.47929.5328Neighbours11BLASTN+2524130.gbk
82906640292686120222Island text1.5397124.175626.8413Neighbours11BLASTN+2906640.gbk
93027515305067823164Island text1.4624723.066619.9354Neighbours11BLASTN+3027515.gbk
103219333324339224060Island text2.0211228.756324.467Neighbours11BLASTN+3219333.gbk
113446895349495448060Island text3.6878948.497937.3807Neighbours12BLASTN+3446895.gbk
123735654*375827922626Island text1.5445330.216428.3104Neighbours11BLASTN3735654.gbk