Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_019757: Cylindrospermum stagnale PCC 7417, complete genome

NCBI: NC_019757

Host Lineage: Cylindrospermum stagnale; Cylindrospermum; Nostocaceae; Nostocales; Cyanobacteria; Bacteria

General Information: Isolation: Soil, greenhouse, Stockholm, Sweden, 1972; Temp: Mesophile.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
174330576690823604Island text2.1867334.077150.2822Neighbours14BLASTN+743305.gbk
21309766132775317988Island text1.4742426.06437.5137Neighbours14BLASTN1309766.gbk
31789237*181237023134Island text1.7927122.662328.4992Neighbours14BLASTN+1789237.gbk
42243796226167417879Island text1.7409424.659524.4061Neighbours14BLASTN+2243796.gbk
52675873*269606620194Island text2.1112532.623450.7583Neighbours14BLASTN2675873.gbk
63010262302974319482Island text1.4835323.024138.4212Neighbours14+3010262.gbk
73492500*351201419515Island text1.5322324.290743.8848Neighbours14BLASTN3492500.gbk
83563000358164118642Island text1.5853422.86838.3573Neighbours21BLASTN3563000.gbk
93869047388857019524Island text1.5427529.286244.8639Neighbours14BLASTN3869047.gbk
104293000431201919020Island text2.3757322.639517.1377Neighbours14BLASTN+4293000.gbk
114643160466259919440Island text1.9076832.347741.9246Neighbours14BLASTN4643160.gbk
124739206476216822963Island text1.4990626.933443.7203Neighbours21BLASTN4739206.gbk
134878417490060322187Island text1.5066529.432140.4394Neighbours21+4878417.gbk
144931847*495122919383Island text1.6036223.075830.5031Neighbours21BLASTN+4931847.gbk
154953806497708423279Island text1.8050523.273318.3457BLASTN+4953806.gbk
165085648*510815122504Island text3.2388722.762612.4904Neighbours14BLASTN+5085648.gbk
175748432576824719816Island text2.1903322.859927.9043Neighbours14BLASTN+5748432.gbk
185852000*587699925000Island text1.8371936.888731.1986Neighbours14BLASTN+5852000.gbk
195931500*594985718358Island text1.5205522.829539.9257Neighbours14BLASTN5931500.gbk