Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_019748: Stanieria cyanosphaera PCC 7437, complete genome

NCBI: NC_019748

Host Lineage: Stanieria cyanosphaera; Stanieria; ; Pleurocapsales; Cyanobacteria; Bacteria

General Information: Isolation: Pool at botanical garden, Havana, Cuba; Temp: Mesophile.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
142358*6787025513Island text2.3745421.84338.3786Neighbours21BLASTN+42358.gbk
276301178697523965Island text2.8632531.210540.7145Neighbours14BLASTN+763011.gbk
31634954*165309918146Island text1.6891620.368322.7511Neighbours14BLASTN+1634954.gbk
41846500187209925600Island text1.477224.142835.4489Neighbours14BLASTN1846500.gbk
54129500*415052021021Island text1.5253419.582916.7804Neighbours14BLASTN+4129500.gbk