Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_019673: Saccharothrix espanaensis DSM 44229 complete genome

NCBI: NC_019673

Host Lineage: Saccharothrix espanaensis; Saccharothrix; Pseudonocardiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Glycosylate natural products. Producer of the saccharomicins, a new class of heptadecaglycoside antibiotics with activity against MRSA and VRE.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1189487*21210322617Island text2.0246312.521311.2803Neighbours11BLASTN+189487.gbk
2359540*38271523176Island text1.4836913.752415.5561Neighbours11BLASTN359540.gbk
3526000*56212836129Island text1.4702812.560817.9894Neighbours11BLASTN+526000.gbk
489541891638420967Island text1.6469217.597523.0044Neighbours11BLASTN+895418.gbk
596755999074423186Island text1.6944514.018627.348Neighbours11BLASTN967559.gbk
61039258*106559926342Island text4.1979119.070222.4789Neighbours11BLASTN+1039258.gbk
71275627*131011934493Island text1.5202513.287312.0721Neighbours11BLASTN+1275627.gbk
81384795141142926635Island text2.9211618.743734.2148Neighbours11BLASTN+1384795.gbk
91420198*144786527668Island text1.5313912.062312.2731Neighbours11BLASTN+1420198.gbk
101456999*147793620938Island text2.0329413.611215.3746Neighbours11BLASTN+1456999.gbk
111584739160360318865Island text2.0431212.181812.7726Neighbours11BLASTN+1584739.gbk
121656680168172225043Island text1.9932712.104823.5778Neighbours11BLASTN1656680.gbk
131988853*204493756085Island text1.5103712.530419.8684Neighbours11BLASTN+1988853.gbk
142051363214091689554Island text2.9805515.924721.0132Neighbours11BLASTN+2051363.gbk
152155669217568920021Island text1.774215.182523.4932Neighbours11BLASTN2155669.gbk
162185005220689621892Island text1.8696313.327916.806Neighbours11BLASTN2185005.gbk
172257259228409926841Island text1.7096912.056211.4265Neighbours11BLASTN+2257259.gbk
182635585*265953723953Island text1.6846513.491713.3806Neighbours11BLASTN2635585.gbk
192671458269185220395Island text1.6015912.137212.0082Neighbours11BLASTN2671458.gbk
202733327275459921273Island text1.5015613.226617.0175Neighbours11BLASTN+2733327.gbk
213041936*305959917664Island text1.5440912.706723.0113Neighbours11BLASTN+3041936.gbk
223253650327924925600Island text1.6769114.313622.9641Neighbours11BLASTN+3253650.gbk
233559185357959920415Island text2.1171211.907218.4249Neighbours11BLASTN+3559185.gbk
243582004360487622873Island text1.6030912.904319.4664Neighbours11BLASTN+3582004.gbk
253607958365209944142Island text1.7702313.211311.4904Neighbours11BLASTN3607958.gbk
263726519374519118673Island text1.6182812.220314.8455Neighbours11BLASTN+3726519.gbk
274687289471371226424Island text1.8462212.750515.7762Neighbours11BLASTN4687289.gbk
284974422*499802723606Island text1.6385312.238610.391Neighbours11BLASTN+4974422.gbk
296259229627944020212Island text1.7374821.222435.427Neighbours11BLASTN+6259229.gbk
306298342*632793229591Island text1.6308612.509718.1264Neighbours11BLASTN+6298342.gbk
316362458*639102228565Island text1.6217312.538515.1212Neighbours11BLASTN+6362458.gbk
326394319646135767039Island text1.6832712.873817.5312Neighbours11BLASTN+6394319.gbk
336473743649626922527Island text1.968114.809511.0057Neighbours11BLASTN6473743.gbk
346778401680115922759Island text2.3347215.408119.2694Neighbours11BLASTN6778401.gbk
357400817742136920553Island text1.5028212.506113.808Neighbours11BLASTN+7400817.gbk
367598026762632928304Island text1.8125812.202119.7426Neighbours11BLASTN+7598026.gbk
377738588*775761819031Island text3.5288517.892822.5938Neighbours11BLASTN7738588.gbk
387797666782158623921Island text3.5865619.6426.7726Neighbours11BLASTN7797666.gbk
397951493*797009918607Island text1.6501412.767523.4346Neighbours11BLASTN+7951493.gbk
408057941808196224022Island text2.0935714.59328.1657Neighbours11BLASTN+8057941.gbk
418114376813609921724Island text1.6957412.278122.7393Neighbours11BLASTN8114376.gbk
428161242*818734226101Island text1.6484613.594424.4366Neighbours11BLASTN+8161242.gbk
438348604837459925996Island text1.6377811.919416.756Neighbours11BLASTN+8348604.gbk
448581000*860834127342Island text1.7582614.095711.742Neighbours11BLASTN+8581000.gbk
458734993*875416019168Island text1.62613.021620.7821Neighbours11BLASTN8734993.gbk
468763773*879367729905Island text1.7359915.466914.3249Neighbours11BLASTN+8763773.gbk
478799533*883442634894Island text2.7988117.139216.8212Neighbours11BLASTN+8799533.gbk
489084045910393319889Island text3.098817.802428.0244Neighbours11BLASTN+9084045.gbk