Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_018876: Methanolobus psychrophilus R15 chromosome, complete genome

NCBI: NC_018876

Host Lineage: Methanolobus psychrophilus; Methanolobus; Methanosarcinaceae; Methanosarcinales; Euryarchaeota; Archaea

General Information: This strain is phylogenetically affiliated with the Methanosarcinacea family. Psychrophilic methanogenic archaeon. Autotrophic methanogen, Nitrogen fixation.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1168207*21227744071Island text2.6880831.135714.0982Neighbours21BLASTN168207.gbk
230746433095923496Island text2.0196634.559723.2671Neighbours21BLASTN+307464.gbk
351622055847942260Island text2.8941834.421527.2876Neighbours21BLASTN+516220.gbk
458709462359936506Island text2.9280831.323515.5162Neighbours21BLASTN+587094.gbk
570363373052226890Island text3.6696631.897115.1695Neighbours328BLASTN+703633.gbk
6863314*88287419561Island text1.6067829.076546.8997Neighbours318BLASTN+863314.gbk
7996855*103260435750Island text1.6574332.892248.2986BLASTN996855.gbk
81061682110259240911Island text2.2645129.264420.092Neighbours21BLASTN+1061682.gbk
91121268*114800426737Island text1.6462335.218348.5891BLASTN+1121268.gbk
101489895151373523841Island text1.8017639.763745.1923Neighbours318BLASTN1489895.gbk
111551155157432923175Island text1.4602134.672937.867Neighbours328BLASTN+1551155.gbk
122151226217409922874Island text1.4673929.584139.1095Neighbours318BLASTN+2151226.gbk
132189798222248932692Island text1.8460838.140249.1869Neighbours21BLASTN2189798.gbk
142277160*229993322774Island text1.5418128.574938.2263Neighbours21BLASTN+2277160.gbk
152305659233875933101Island text2.3954229.590813.6023Neighbours21BLASTN+2305659.gbk
162380018*240166121644Island text2.2738930.878524.8759Neighbours318BLASTN+2380018.gbk
172403892243268228791Island text3.0159530.877719.3852Neighbours21BLASTN+2403892.gbk
182563725*258725423530Island text1.5407332.666641.6311Neighbours318BLASTN+2563725.gbk
192604055*262374619692Island text5.191935.516213.1265BLASTN2604055.gbk
202628966*268509956134Island text1.4951331.116245.1334Neighbours328BLASTN+2628966.gbk
212760000278209922100Island text1.5056631.288541.1662BLASTN2760000.gbk