Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_018868: Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genome

NCBI: NC_018868

Host Lineage: Simiduia agarivorans; Simiduia; ; ; Proteobacteria; Bacteria

General Information: Simiduia agarivorans strain SA1 was isolated from shallow seawater from the coastal region of Keelung, Taiwan and is able to degrade a variety of polysaccharides, such as agar, alginate, cellulose, and chitin. Mesophilic and halophilic.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1282738*30817025433Island text2.1713234.971348.3463Neighbours15BLASTN+282738.gbk
2569423*61904449622Island text3.4609644.03233.2338Neighbours45BLASTN569423.gbk
361911367007150959Island text1.5605430.017330.8465Neighbours46BLASTN+619113.gbk
4973379*99850825130Island text1.608530.882943.2006Neighbours15BLASTN973379.gbk
51271742129953427793Island text1.9134935.360446.7834Neighbours41BLASTN+1271742.gbk
61352000*138222930230Island text2.7223138.974342.7667Neighbours41BLASTN1352000.gbk
71960542201659956058Island text2.2534337.113336.6332Neighbours14BLASTN+1960542.gbk
82458122*248388625765Island text1.9379135.548651.3252Neighbours41BLASTN+2458122.gbk
92615822264376527944Island text2.0224833.051348.4977Neighbours41BLASTN+2615822.gbk
102867500289242724928Island text1.9541639.533755.2899Neighbours15BLASTN+2867500.gbk
112935580295799622417Island text2.1976838.231338.2189Neighbours45BLASTN+2935580.gbk
123036205*307547539271Island text2.6852941.810639.145Neighbours310BLASTN+3036205.gbk
133229381325457825198Island text2.2347339.527834.8191Neighbours53BLASTN3229381.gbk
143943088397038227295Island text1.7920729.009629.1997Neighbours15BLASTN+3943088.gbk
154010615403309922485Island text2.621441.738637.8596Neighbours310BLASTN+4010615.gbk
164174794*419807223279Island text2.5206438.432435.9984Neighbours41BLASTN4174794.gbk