Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_018867: Dehalobacter sp. CF chromosome, complete genome

NCBI: NC_018867

Host Lineage: Dehalobacter; Dehalobacter; Peptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: Nitrogen fixation.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
110238*7208361846Island text1.9725827.411226.5081Neighbours21BLASTN+10238.gbk
212151215185030339Island text1.6867530.072536.9384Neighbours23BLASTN+121512.gbk
3179975*20939629422Island text2.3987827.058722.0054Neighbours21BLASTN+179975.gbk
4361423*38102619604Island text2.8744730.111153.3865Neighbours22BLASTN+361423.gbk
5677848*70093323086Island text2.3524827.459318.1204Neighbours21BLASTN+677848.gbk
6993903101817324271Island text2.1382227.63331.897Neighbours22BLASTN+993903.gbk
71161648121259950952Island text3.0197227.646220.2423Neighbours21BLASTN+1161648.gbk
81303287132578822502Island text1.6360329.487532.2126Neighbours21BLASTN+1303287.gbk
91357540137628518746Island text1.5024233.730525.6852Neighbours315BLASTN1357540.gbk
101407163*145586448702Island text2.3494529.2231.1951Neighbours21BLASTN+1407163.gbk
111837941186658528645Island text2.8511129.831641.5296Neighbours21BLASTN+1837941.gbk
121996154*202087224719Island text2.2784430.506531.0765Neighbours21BLASTN+1996154.gbk
132063741*208570321963Island text1.6861726.881623.4742Neighbours21BLASTN2063741.gbk
142354000237609922100Island text1.4139727.316442.7823Neighbours23BLASTN2354000.gbk