Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_018866: Dehalobacter sp. DCA chromosome, complete genome

NCBI: NC_018866

Host Lineage: Dehalobacter; Dehalobacter; Peptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: Nitrogen fixation.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1278784825220375Island text1.8400326.351721.9119Neighbours32BLASTN27878.gbk
263498*9380830311Island text2.4385627.71722.2483Neighbours23BLASTN63498.gbk
3108812*14180132990Island text2.5357726.998422.06Neighbours21BLASTN+108812.gbk
415425217209917848Island text2.6074625.690128.9499Neighbours21BLASTN154252.gbk
5611588*63427622689Island text2.6828726.948616.5063Neighbours21BLASTN+611588.gbk
6925704*94471719014Island text1.6540526.465230.6493Neighbours21BLASTN+925704.gbk
71224748124347118724Island text1.655929.043731.7139Neighbours21BLASTN+1224748.gbk
81279000129768818689Island text1.5308934.709427.8475Neighbours315BLASTN1279000.gbk
91328623134818119559Island text2.0094226.729733.5242Neighbours21BLASTN1328623.gbk
101402259*142136519107Island text1.4880336.174621.8784Neighbours315BLASTN1402259.gbk
111706000*173043224433Island text2.2323526.208638.3482Neighbours22BLASTN+1706000.gbk
121790564182831437751Island text1.6460826.644935.9813Neighbours21BLASTN+1790564.gbk
131966373*199109924727Island text2.4972729.378322.3029Neighbours21BLASTN+1966373.gbk
142033960*205592221963Island text1.7080825.652425.1553Neighbours21BLASTN2033960.gbk
152484500*250209917600Island text1.5200335.998352.1318Neighbours21BLASTN2484500.gbk