Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_018720: Bifidobacterium asteroides PRL2011 chromosome, complete genome

NCBI: NC_018720

Host Lineage: Bifidobacterium asteroides; Bifidobacterium; Bifidobacteriaceae; Bifidobacteriales; Actinobacteria; Bacteria

General Information: Bifidobacterium asteroides (strain PRL2011) is an aerobic, Gram-positive bacterium isolated from the hindgut of Apis mellifera var. ligustica, commonly known as the honey bee.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
147984*7823030247Island text3.5653243.089944.1347Neighbours11BLASTN+47984.gbk
217630623239356088Island text2.1236830.941831.381Neighbours11BLASTN+176306.gbk
331184433489323050Island text1.9436929.930730.3569Neighbours33BLASTN+311844.gbk
4357716*38686729152Island text2.3937535.670936.9142BLASTN+357716.gbk
5417500*43759920100Island text2.3616831.851935.59BLASTN+417500.gbk
645728947721319925Island text1.8045929.565933.0491BLASTN457289.gbk
7627642*65004222401Island text1.5542431.849426.3035Neighbours332BLASTN+627642.gbk
8993869*102159927731Island text3.6072644.949230.1448Neighbours11BLASTN+993869.gbk
91186058120587819821Island text2.2248528.565826.7633Neighbours11BLASTN1186058.gbk
101336839*137142134583Island text2.9947638.051632.9804Neighbours11BLASTN+1336839.gbk
111468397*148890420508Island text1.9964130.630733.5597BLASTN+1468397.gbk
121510084153502824945Island text1.6769127.644728.0424BLASTN+1510084.gbk
131611213*163456123349Island text1.7646228.036847.2469BLASTN+1611213.gbk
141812000183689224893Island text1.7733929.143424.4488BLASTN1812000.gbk
151878201190278524585Island text3.4718139.909935.928BLASTN1878201.gbk
162000028*201899718970Island text1.6856129.884123.2641BLASTN+2000028.gbk
172039000205930520306Island text2.0351331.156432.973BLASTN+2039000.gbk
182097694*213123233539Island text3.1495540.228939.9848BLASTN+2097694.gbk
192138180*217949941320Island text4.287548.481237.6329BLASTN2138180.gbk