Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_018704: Amphibacillus xylanus NBRC 15112, complete genome

NCBI: NC_018704

Host Lineage: Amphibacillus xylanus; Amphibacillus; Bacillaceae; Bacillales; Firmicutes; Bacteria

General Information: Amphibacillus xylanus is an alkaliphilic microorganism that grows at pH 8 - 10. This organism is also able to digest xylan aerobically and anaerobically. Facultative anaerobic, spore-forming, Gram-positive bacterium isolated from alcaline compost of manure with grass and rice straw.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
181733*11606034328Island text4.0845831.309651.746Neighbours344BLASTN81733.gbk
2124823*14364118819Island text1.7456921.780836.263BLASTN124823.gbk
3176088*21839342306Island text2.6451526.331635.1459Neighbours21BLASTN+176088.gbk
4347948*37014822201Island text4.177132.049249.1879Neighbours21BLASTN+347948.gbk
543340245651923118Island text1.4254423.285531.0878Neighbours21BLASTN+433402.gbk
6645843*66848522643Island text3.7940330.414149.9787Neighbours21BLASTN+645843.gbk
7896209*92081324605Island text3.5964330.059346.8546Neighbours21BLASTN+896209.gbk
81424728144309918372Island text1.5851520.953929.3885Neighbours21BLASTN+1424728.gbk
92149229*216937320145Island text1.608421.081631.6665Neighbours325BLASTN2149229.gbk
102417902243940821507Island text1.6899121.910735.4976Neighbours21BLASTN+2417902.gbk