Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_018681: Nocardia brasiliensis ATCC 700358 chromosome, complete genome

NCBI: NC_018681

Host Lineage: Nocardia brasiliensis; Nocardia; Nocardiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Location: Mexico; Host: Human. Mycetoma of the thorax with dissemination to the lungs.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1441014*47306232049Island text2.0425620.160818.1822Neighbours11BLASTN+441014.gbk
2867230*90173034501Island text2.8805427.445525.7929Neighbours11BLASTN+867230.gbk
31021063*104680525743Island text1.8341719.67622.2879Neighbours11BLASTN1021063.gbk
42176000*220130925310Island text3.1128924.149531.7396Neighbours11BLASTN2176000.gbk
52447871247939431524Island text1.761919.342825.941Neighbours11BLASTN2447871.gbk
62985078300409919022Island text2.4933523.469428.1692Neighbours11BLASTN2985078.gbk
73541484*357298031497Island text1.9549218.805222.9691Neighbours11BLASTN+3541484.gbk
84554500457209917600Island text1.5654213.899913.5461Neighbours114554500.gbk
95378197541859940403Island text1.6137615.776913.972Neighbours11BLASTN+5378197.gbk
105463000548572822729Island text3.0473124.004526.123Neighbours11BLASTN5463000.gbk
115490963*552859937637Island text1.4740416.421422.6885Neighbours11BLASTN+5490963.gbk
125551000559198440985Island text1.8504721.324516.54Neighbours11BLASTN+5551000.gbk
135627940567856250623Island text1.5989916.798319.6242Neighbours11BLASTN+5627940.gbk
145695343573584040498Island text1.5754416.280821.1567Neighbours11BLASTN+5695343.gbk
156977670700159923930Island text1.5557717.207118.4745Neighbours11BLASTN+6977670.gbk
167191008721671325706Island text1.9095316.992721.424Neighbours11BLASTN+7191008.gbk
177624000*764748423485Island text1.6605914.427910.6605Neighbours11BLASTN7624000.gbk
187692560771641223853Island text1.8385515.404620.1933Neighbours11BLASTN7692560.gbk
199262000*929365331654Island text2.0905221.50318.1173Neighbours11BLASTN9262000.gbk