Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_018678: Alteromonas macleodii str. 'English Channel 673' chromosome,

NCBI: NC_018678

Host Lineage: Alteromonas macleodii; Alteromonas; Alteromonadaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: Alteromonas macleodii is an obligate marine bacterium isolated from both surface and deep seawater and often associated with particulate matter. Strain English Channel 673 comes from surface waters of the L4 long-term coastal monitoring station in the Western English Channel.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
18706411077423711Island text1.5091233.298946.4307BLASTN+IslandViewer 87064.gbk
2554675*57858523911Island text1.4426729.225416.3479Neighbours21BLASTN+IslandViewer 554675.gbk
31745944176359917656Island text1.5296428.985345.7912BLASTN+1745944.gbk
41820390184089420505Island text1.863227.465324.8386Neighbours41BLASTNIslandViewer 1820390.gbk
52140182216322323042Island text1.6341227.450126.1177Neighbours21BLASTNIslandViewer 2140182.gbk
62382708240851125804Island text1.5666732.078431.7609Neighbours21+IslandViewer 2382708.gbk
73953809397263618828Island text1.7629229.172919.1925Neighbours21BLASTN+IslandViewer 3953809.gbk