Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_018664: Clostridium acidurici 9a chromosome, complete genome

NCBI: NC_018664

Host Lineage: Gottschalkia acidurici; Gottschalkia; ; Clostridiales; Firmicutes; Bacteria

General Information: Clostridium acidiurici is an obligate anaerobic Gram-positive bacterium that is motile and spore-forming. It can be isolated from almost every soil but can also be found in the intestinal tract of birds. It is able to use purines like uric acid as sole carbon, nitrogen and energy source to build ammonia, carbon dioxide and acetic acid. Unlike most other Clostridia it is a specialist and not able to grow on sugars or different other substrates than purines.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
11*2406624066Island text5.1066123.685843.7563Neighbours21BLASTN+1.gbk
215929118728527995Island text3.4294222.304943.2826Neighbours21BLASTN159291.gbk
320148722329221806Island text2.7692320.689437.3919Neighbours21BLASTN201487.gbk
423900026409925100Island text4.2112521.729441.6593Neighbours21BLASTN239000.gbk
528776930695419186Island text3.2004419.716736.9533Neighbours21BLASTN+287769.gbk
6985689*100461118923Island text5.5680525.95945.7964Neighbours344BLASTN985689.gbk
71279950129986019911Island text2.724219.818538.5715Neighbours21BLASTN1279950.gbk
81573925*159751923595Island text2.2586319.944725.8131Neighbours323BLASTN+IslandViewer 1573925.gbk
91663324168566922346Island text3.8461519.189437.5685Neighbours21BLASTN1663324.gbk
101699618*171859918982Island text4.1130420.219839.8668Neighbours21BLASTN1699618.gbk
111729794*175215622363Island text3.4590817.898834.0906Neighbours21BLASTN+1729794.gbk
121795223*181833923117Island text2.9284318.789538.7014Neighbours21BLASTN1795223.gbk
132279687230209922413Island text2.6938418.050829.3276Neighbours21BLASTN+2279687.gbk
142357882*238773229851Island text4.1801119.804837.7452Neighbours21BLASTN+2357882.gbk
152459994*248609926106Island text6.6816225.920347.5834Neighbours323BLASTN2459994.gbk
162638102265775819657Island text2.883520.092136.4701Neighbours21BLASTN+2638102.gbk
173009166*304846639301Island text6.318330.231246.0917Neighbours344BLASTN3009166.gbk
183073022*309307020049Island text2.8375720.182434.319Neighbours21BLASTN3073022.gbk