Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_018645: Desulfobacula toluolica Tol2, complete genome

NCBI: NC_018645

Host Lineage: Desulfobacula toluolica; Desulfobacula; Desulfobacteraceae; Desulfobacterales; Proteobacteria; Bacteria

General Information: Desulfobacula toluolica is a toluene-degrading sulfate-reducing bacterium, isolated from marine sediment under strictly anoxic conditions.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1134083210218695Island text1.5877232.127545.3486Neighbours22BLASTN13408.gbk
2247917*27009922183Island text1.461632.587531.2523Neighbours32247917.gbk
31798874183074531872Island text2.0400443.487129.702Neighbours32BLASTN+1798874.gbk
42301705*232572024016Island text1.8395829.350348.7912Neighbours22BLASTN2301705.gbk
52390032*240910519074Island text1.4941233.639344.037BLASTN+2390032.gbk
62492779251309920321Island text2.0617924.168814.746Neighbours212492779.gbk
72690325271228721963Island text1.7529123.511519.3958Neighbours212690325.gbk
83029785*305242822644Island text1.615423.057517.1215Neighbours328BLASTN+3029785.gbk
93719302374409524794Island text1.6472132.447746.9607Neighbours21BLASTN+3719302.gbk
103977352*400100523654Island text1.4804123.911721.6348Neighbours32BLASTN+3977352.gbk
114049831*407385324023Island text1.5448823.127832.4458Neighbours21BLASTN4049831.gbk
124104302413507830777Island text2.2301426.250915.691Neighbours214104302.gbk
134277393430706829676Island text1.785723.753812.7025Neighbours21BLASTN+4277393.gbk
144490957*451584224886Island text1.8022325.023514.1889Neighbours214490957.gbk
154879931490385323923Island text1.5193729.932742.9833Neighbours32BLASTN+4879931.gbk
164945698496810622409Island text1.4827931.456721.0196Neighbours32BLASTN4945698.gbk