Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_018644: Alpha proteobacterium HIMB59 chromosome, complete genome

NCBI: NC_018644

Host Lineage: alpha proteobacterium HIMB59; alpha proteobacterium; ; ; Proteobacteria; Bacteria

General Information: Collected from Kaneohe Bay, Hawaii. This is a class of Proteobacteria, includes non-sulphur purple bacteria and their heterotrophicdescendants.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1137755*17668438930Island text2.0971325.070324.0041Neighbours21BLASTN+IslandViewer 137755.gbk
221062723150120875Island text1.615521.466124.197Neighbours21+210627.gbk
344610247041224311Island text1.4345920.640811.3838Neighbours21BLASTN446102.gbk
447807749686418788Island text1.6137219.400517.2372Neighbours21BLASTN+478077.gbk
5516157*55292036764Island text2.2163525.246923.4831Neighbours21BLASTN+IslandViewer 516157.gbk
660220062670824509Island text1.6229120.640118.5909Neighbours21BLASTN+602200.gbk
7637497*66068923193Island text1.4501322.154714.7216Neighbours21BLASTN+637497.gbk
8910000*93169821699Island text1.5470219.139628.1581Neighbours21BLASTN910000.gbk
91197897*122359925703Island text1.8269125.373127.1799Neighbours21BLASTN+1197897.gbk
101263891*128610122211Island text1.6193525.942424.6108Neighbours21BLASTN+1263891.gbk