Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_018643: Alpha proteobacterium HIMB5 chromosome, complete genome

NCBI: NC_018643

Host Lineage: alpha proteobacterium HIMB5; alpha proteobacterium; ; ; Proteobacteria; Bacteria

General Information: This strain was collected from Kaneohe Bay, outside the North channel.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
11*1850918509Island text1.5791714.223622.3109Neighbours21BLASTN1.gbk
2320197*34344223246Island text1.8754715.945223.2572Neighbours21+320197.gbk
3482676*50224119566Island text1.6353313.925727.0861Neighbours21BLASTN482676.gbk
4641360*66431322954Island text1.7288614.585425.8862Neighbours21BLASTN+641360.gbk
5673195*70659933405Island text2.2029716.132430.0242Neighbours21BLASTN+673195.gbk
675410478330629203Island text1.7605218.680226.1464Neighbours21BLASTN+754104.gbk
780740583193124527Island text1.6158416.588125.3411Neighbours21BLASTN+807405.gbk
885791191039052480Island text1.7920817.435225.2477Neighbours21BLASTN+857911.gbk
9937486*96281825333Island text1.4979318.683129.9549Neighbours21BLASTN937486.gbk
101037456*106097823523Island text1.6725714.53927.7532Neighbours21BLASTN1037456.gbk
111080514*110855828045Island text1.7884815.564226.8547Neighbours211080514.gbk
121309804133632326520Island text1.3913214.877226.5745Neighbours21BLASTN+1309804.gbk