Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_018607: Brachyspira pilosicoli B2904 chromosome, complete genome

NCBI: NC_018607

Host Lineage: Brachyspira pilosicoli; Brachyspira; Brachyspiraceae; Spirochaetales; Spirochaetes; Bacteria

General Information: Brachyspira pilosicoli is an anaerobic spirochete that colonizes the large intestine of various species of birds and animals and humans. It attaches to colonic enterocytes in a condition called 'intestinal spirochetosis', characterized by mild colitis, diarrhea and reduced growth.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1135612*17740241791Island text2.6697612.84523.4438Neighbours21BLASTN+135612.gbk
2290500*33195841459Island text1.6107815.769625.9603Neighbours21BLASTN+290500.gbk
366269768184019144Island text1.4855316.457929.1936Neighbours21BLASTN662697.gbk
4805966*82617920214Island text1.6222214.25328.8342Neighbours21BLASTN805966.gbk
5895204*91374618543Island text1.6084112.971222.3109Neighbours21BLASTN+895204.gbk
6921923*96497843056Island text1.719314.272925.3393Neighbours21BLASTN+921923.gbk
71134900*115330818409Island text1.7619213.438325.7065Neighbours21BLASTN1134900.gbk
81185195*121087125677Island text1.6517313.679520.0248Neighbours21BLASTN+IslandViewer 1185195.gbk
91251357*127532423968Island text1.4816514.080725.7827Neighbours21BLASTN+1251357.gbk
101313035*134237429340Island text2.9599815.034418.6311Neighbours21BLASTN+1313035.gbk
111463918148609922182Island text1.5151915.618928.2312Neighbours21BLASTN+1463918.gbk
121505908154680040893Island text1.9664313.923625.4569Neighbours21BLASTN1505908.gbk
131648607*167250423898Island text1.6230614.378621.1292Neighbours21BLASTN+1648607.gbk
141803500*182666923170Island text1.8918915.181228.9475Neighbours21BLASTN+IslandViewer 1803500.gbk
151865972188386417893Island text1.5417121.194128.8647Neighbours21BLASTN1865972.gbk
162010500*202914018641Island text2.2600613.019826.3796Neighbours21BLASTN+2010500.gbk
172032566205173419169Island text2.8561411.648816.2505Neighbours21BLASTN+IslandViewer 2032566.gbk
182111581214532233742Island text1.7465513.613816.6799Neighbours21BLASTN+2111581.gbk
192184832*220348618655Island text1.6017613.436322.9321Neighbours21BLASTN2184832.gbk
202231975*225336921395Island text1.6527714.31326.8888Neighbours21BLASTN2231975.gbk
212375344239765322310Island text1.8243514.937421.245Neighbours21BLASTN+2375344.gbk
222472250*249712524876Island text2.1926916.197827.6882Neighbours21BLASTN2472250.gbk
232578433260018821756Island text1.78414.19426.176Neighbours21BLASTN+2578433.gbk
242747462277099923538Island text1.7571114.541823.3293Neighbours21BLASTN2747462.gbk