Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_018606: Cardinium endosymbiont cPer1 of Encarsia pergandiella plasmid

NCBI: NC_018606

Host Lineage: Cardinium endosymbiont of Encarsia pergandiella; Cardinium; Amoebophilaceae; Cytophagales; Bacteroidetes; Bacteria

General Information: This bacterium is often located within the reproductive tissues of the host. It is often found with other arthropod-associated Bacteroidetes that alter host biology (ex. Wolbachia). Distantly related hosts can harbor closely related Cardinium. Closely related Cardinium also tend to cluster with closely related hosts. Current research has shown 'Cardinium' to be an endosymbiot capable of altering host sexuality, resultant offspring as well as possible antibiotic resistance.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1400006599926000Island text1.3753511.685316.0982Neighbours21BLASTN+40000.gbk