Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_018604: Brachyspira pilosicoli WesB complete genome

NCBI: NC_018604

Host Lineage: Brachyspira pilosicoli; Brachyspira; Brachyspiraceae; Spirochaetales; Spirochaetes; Bacteria

General Information: Brachyspira pilosicoli is an anaerobic spirochete that colonizes the large intestine of various species of birds and animals and humans. It attaches to colonic enterocytes in a condition called 'intestinal spirochetosis', characterized by mild colitis, diarrhea and reduced growth.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
112811315344025328Island text1.996813.056325.9471Neighbours21BLASTN128113.gbk
223376925745523687Island text1.347515.466928.9743Neighbours21BLASTN+233769.gbk
330595735100445048Island text2.9912615.295627.4703Neighbours21BLASTN+305957.gbk
4393338*41591422577Island text2.4232716.217428.3218Neighbours21BLASTN393338.gbk
549206851382321756Island text1.8044315.77823.8945Neighbours21BLASTN492068.gbk
675881978681627998Island text2.505616.604130.8333Neighbours21BLASTN+758819.gbk
778957581008920515Island text1.7517215.541128.7992Neighbours21BLASTN789575.gbk
8838932*86441725486Island text2.5026221.022113.6979Neighbours21BLASTN838932.gbk
91045774*106959923826Island text1.8243317.052330.1522Neighbours21BLASTN+1045774.gbk
101137797*116009922303Island text1.4199714.779921.2754Neighbours21BLASTN+1137797.gbk
111263927128817424248Island text1.6306515.871531.4198Neighbours21BLASTN+1263927.gbk
121292889131203019142Island text3.3915714.801218.4005Neighbours21BLASTN+1292889.gbk
131329228*134893419707Island text1.6714514.190226.6659Neighbours21BLASTN1329228.gbk
141385788*140850122714Island text1.6562814.40920.6359Neighbours21BLASTN+1385788.gbk
151489567*151411524549Island text1.5052914.725228.0424Neighbours21BLASTN+1489567.gbk
161534074155448520412Island text1.5636616.023230.0311Neighbours21BLASTN+1534074.gbk
171556425*158646830044Island text3.500716.210116.959Neighbours21BLASTN+1556425.gbk
181943561196628922729Island text1.8394415.108828.7483Neighbours21BLASTN+1943561.gbk
192053585*209121237628Island text1.7677714.572625.5923Neighbours21BLASTN2053585.gbk
202253539227800524467Island text1.6794818.665724.6473Neighbours21BLASTN+2253539.gbk
212303239*232188618648Island text1.5695413.834524.7229Neighbours21BLASTN2303239.gbk
222350054*237001019957Island text1.5354314.846826.8181Neighbours21BLASTN2350054.gbk
232377549*240019422646Island text1.6324814.351329.3337Neighbours21BLASTN2377549.gbk
242579000*263363754638Island text2.2792516.074628.4028Neighbours21BLASTN+2579000.gbk
252763593279076727175Island text1.7422515.447714.1169Neighbours21BLASTN+2763593.gbk
262871328289499923672Island text1.8604714.545224.1503Neighbours21BLASTN2871328.gbk