Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_018532: Arthrobacter sp. Rue61a plasmid p232, complete sequence

NCBI: NC_018532

Host Lineage: Arthrobacter; Arthrobacter; Micrococcaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Bacteria of the genus Arthrobacter are ubiquitous in the environment. They are characterized by nutritional versatility and pronounced resistance to desiccation, long-term starvation, toxic compounds, oxidative stress, and other environmental stress conditions. Arthrobacter nitroguajacolicus strain RĂ¼61a was previously isolated from sludge of the biological wastewater treatment plant of a coal tar refining company, based on its ability to utilize quinaldine (2-methylquinoline) as source of carbon and energy.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1166468*21844051973Island text1.6869924.772936.4463Neighbours11BLASTN+166468.gbk