Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_018531: Arthrobacter sp. Rue61a chromosome, complete genome

NCBI: NC_018531

Host Lineage: Arthrobacter; Arthrobacter; Micrococcaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Bacteria of the genus Arthrobacter are ubiquitous in the environment. They are characterized by nutritional versatility and pronounced resistance to desiccation, long-term starvation, toxic compounds, oxidative stress, and other environmental stress conditions. Arthrobacter nitroguajacolicus strain RĂ¼61a was previously isolated from sludge of the biological wastewater treatment plant of a coal tar refining company, based on its ability to utilize quinaldine (2-methylquinoline) as source of carbon and energy.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
11900619*194181741199Island text2.1578828.617740.9987Neighbours11BLASTN+IslandViewer 1900619.gbk
21991218201022919012Island text1.8849723.194834.1267Neighbours11BLASTN+1991218.gbk
32085939210841722479Island text1.7690722.992235.9841Neighbours11BLASTN+IslandViewer 2085939.gbk
43625810365959233783Island text2.1548222.392628.5032Neighbours11BLASTNIslandViewer 3625810.gbk
53679978369972019743Island text1.514118.786536.4052Neighbours11BLASTN3679978.gbk
63983925400312819204Island text1.5873820.263936.3808Neighbours11BLASTN+IslandViewer 3983925.gbk
74718904*474449925596Island text2.4089324.29426.4748Neighbours11BLASTN4718904.gbk