Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_018528: Lactobacillus helveticus R0052 chromosome, complete genome

NCBI: NC_018528

Host Lineage: Lactobacillus helveticus; Lactobacillus; Lactobacillaceae; Lactobacillales; Firmicutes; Bacteria

General Information: The homofermentative thermophilic lactic acid bacterium that is used in the manufacture of Swiss type and long-ripened Italian cheeses, such as Emmental, Grana, and Provolone cheeses.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
165000*9177626777Island text2.408929.059542.9133Neighbours21BLASTN+65000.gbk
2446610*47359926990Island text1.7739626.091940.097Neighbours21BLASTN446610.gbk
369755372043622884Island text1.4711124.92732.7689Neighbours21BLASTN+IslandViewer 697553.gbk
41681060*170729126232Island text2.6340326.694440.4792Neighbours21BLASTN+1681060.gbk
51806761183455627796Island text1.7401230.589226.8319Neighbours21BLASTN+IslandViewer 1806761.gbk
61932000197009938100Island text1.5982927.490824.312Neighbours320BLASTN+IslandViewer 1932000.gbk
72034000205609922100Island text1.4715320.403732.3974Neighbours21BLASTN+IslandViewer 2034000.gbk