Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_018524: Nocardiopsis alba ATCC BAA-2165 chromosome, complete genome

NCBI: NC_018524

Host Lineage: Nocardiopsis alba; Nocardiopsis; Nocardiopsaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Nocardiopsis alba ATCC BAA-2165 is an aerobic Gram-positive bacterium isolated from honeybee guts. USA.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1301992*32409922108Island text2.1739214.445523.9006Neighbours11BLASTN+IslandViewer 301992.gbk
2444217*47409929883Island text3.548926.007320.1136Neighbours12BLASTN+IslandViewer 444217.gbk
3557666*59660438939Island text3.0155221.236918.3949Neighbours11BLASTN+IslandViewer 557666.gbk
41279156130303023875Island text1.8013219.182232.8846Neighbours12BLASTN1279156.gbk
51745949178032034372Island text3.1620722.668128.3973Neighbours11BLASTN+IslandViewer 1745949.gbk
62246225*228118534961Island text3.7482121.159433.6612Neighbours11BLASTN+IslandViewer 2246225.gbk
72338000*236306925070Island text3.6574821.65733.4415Neighbours11BLASTN2338000.gbk
82423016245165228637Island text2.039114.851620.5763Neighbours11BLASTN+IslandViewer 2423016.gbk
92711817273241220596Island text2.1030920.207526.7807Neighbours11BLASTN2711817.gbk
103075000309515420155Island text1.8984915.511723.9035Neighbours12BLASTN+3075000.gbk
113561658358418822531Island text1.7742614.682619.7283Neighbours11BLASTN3561658.gbk
124049990*407854328554Island text3.5647521.262429.2499Neighbours11BLASTN+4049990.gbk
134235773425759921827Island text2.0672516.437117.5062Neighbours11BLASTN4235773.gbk
144564493458409919607Island text3.5562921.200929.9448Neighbours11BLASTN+4564493.gbk
154599809463651236704Island text1.8477514.09927.1897Neighbours12BLASTN4599809.gbk
164656786467595719172Island text1.7253418.448433.6215Neighbours11BLASTN+4656786.gbk
174848154489839850245Island text1.7342115.855224.8031Neighbours11BLASTN+IslandViewer 4848154.gbk
184988810*503746448655Island text1.6633214.648223.0661Neighbours11BLASTN+IslandViewer 4988810.gbk
195066720509078524066Island text1.9476616.234620.6911Neighbours11BLASTN5066720.gbk
205748421577627827858Island text1.7866214.931928.8281Neighbours12BLASTN5748421.gbk