Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_018515: Desulfosporosinus meridiei DSM 13257 chromosome, complete genome

NCBI: NC_018515

Host Lineage: Desulfosporosinus meridiei; Desulfosporosinus; Peptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: Environment: Groundwater; Isolation: Groundwater; Temp: Mesophile; Temp: 30C. Country: Australia, Perth, Western Australia; This organism was originally isolated from gasoline contaminated groundwater.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1223164*24765124488Island text1.7988631.112749.7074BLASTN223164.gbk
257036659217021805Island text2.107230.970641.7068Neighbours22BLASTN+IslandViewer 570366.gbk
359550062671131212Island text1.5658731.189445.9117BLASTN+IslandViewer 595500.gbk
4937994*95729019297Island text2.0819733.279748.7663Neighbours22BLASTN+937994.gbk
5989616*101215322538Island text1.5477735.011634.5414Neighbours22BLASTN989616.gbk
61354511137409419584Island text2.1937750.513531.3084Neighbours22BLASTN1354511.gbk
71406816142928222467Island text2.8525432.800354.087Neighbours316BLASTN+1406816.gbk
81663912*168611922208Island text1.5623129.085647.2469BLASTNIslandViewer 1663912.gbk
93108755*313227423520Island text1.9804834.665647.9888Neighbours21BLASTN+IslandViewer 3108755.gbk
103169973*319347423502Island text1.6089428.836337.1361Neighbours22BLASTN+3169973.gbk
113411276343409922824Island text1.5450238.198245.7212Neighbours21BLASTN+3411276.gbk
123600869*363009929231Island text2.3694434.897952.4445Neighbours22BLASTN+IslandViewer 3600869.gbk
133865522*388474619225Island text1.9790738.861450.6894Neighbours21BLASTN+3865522.gbk
143909646*392811918474Island text2.0721236.25950.5139Neighbours22BLASTN3909646.gbk
153959681*398293223252Island text2.8228536.168558.4572Neighbours22BLASTN3959681.gbk
164148037*416623318197Island text1.5557528.787741.1256Neighbours22BLASTN4148037.gbk
174196409*423259936191Island text1.5413828.723945.0786Neighbours22BLASTN+4196409.gbk
184334240*437632942090Island text1.6482532.566149.0226Neighbours22BLASTNIslandViewer 4334240.gbk
194442500446133318834Island text1.8343934.861135.3167Neighbours22BLASTN+4442500.gbk
204474000*449851424515Island text1.7050330.244438.0771Neighbours21BLASTN+4474000.gbk
214660808469009929292Island text1.5150329.249847.3139Neighbours21BLASTN+IslandViewer 4660808.gbk